Results for "Sir Ganga Ram"
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Public Databases for Bioinformatics !
https://www.nature.com/articles/s414...Server 24 intel cores 256GB RAM 500GB of SSD storage 36TB...ve data 24 intel cores 256GB RAM 500GB of SSD RAID0 storage...SGE server 64 AMD core 256GB RAM 200GB of SSD storage 12TB...ACKED UP* Some parallel programming patterns: # gzip a bun...1150 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing r...an process up to millions of reads per minute using, for example, only 10 GB RAM with a protein database compr...
2880 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome...le nodes using MPI) memory efficient. (Even a single node with 16GB of ram can handle over 1Gbp of seque...
2785 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search to...cost-effective, takes full advantage of multi-core processors and uses a small RAM footprint, Ready to be used...2358 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (...a single reference genome). Based on an extension of BWT for graphs [Sirén et al. 2014], we des...2200 days ago
- BLASR (Basic Local Alignment with Successive Refinement) for mapping Single Molecule...fully documented, but I can explain that to you. I use a 24 cores / 48G ram server for the alignment. It...
2185 days ago
Roary: the Pan Genome Pipeline
Roary is a high speed stand alone pan genome pipeline, whi...amples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To pe...sting methods would take weeks and hundreds of GB of RAM. Roary is not intended for me...1941 days ago
Cactus: a reference-free whole-genome multiple alignment program
Cactus is a reference-free whole-genome multiple alignment program. The principal algorithms are described he...f compute per genome, with about 120 GB of RAM used at peak. The requirement...genomes takes only 1.5 CPU-hours and 14 GB RAM.1739 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
The pipeline can use information from scaffolded assemblie...Desktop computers (Intel i7, 12 CPU threads, 128 GB RAM). Larger mammalian genomes (~...-18 h on server equipment (Xeon, 96 CPU threads, 1TB RAM).1163 days ago
odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as wel...lting in a small in-memory footprint at the cost of packing and unpacking. The RAM and computational savings are...834 days ago
