Dot, an interactive viewer for genome-genome comparison
...w assemblies and perform exploratory comparative genomics. Dot supports the output of MUMmer’s nucmer aligner the most commonly used software method for aligning genome as...2315 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper:&n...2291 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a si...2291 days ago
Circoletto: visualizing sequence similarity with Circos
...s, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and downloadable software package for offline use (sour...2289 days ago
circosJS: d3 library to build circular graphs
Circos is a javascript library to easily build interactive graphs in a circular layout. It's based on d3.js. It aims to be a javascript version of the Circos software. You should consider using Circos to show: relationships between entities periodical data2285 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic an...2257 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...2 (Many-against-Many sequence searching) is a software suite to search and cluster h...nce sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux,...nd (as beta version, via cygwin) Windows. The software is designed to run on multipl...2248 days ago
EWAS: epigenome-wide association study software 2.0
...fy the association between epigenetic variations and disease/phenotype. On the basis of EWAS1.0, we have added more distinctive features. EWAS2.0 software was developed based on our &l...2249 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGra...2222 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
...e alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM). more at https://ccb.jhu.edu/software/hisat2/index.shtml2201 days ago