GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/E...2052 days ago
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vcfR: a package to manipulate and visualize VCF data in R
...converted into other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between VCF data and the R environment connecting familiar software with genomic data....2031 days ago
QUAST-LG: Versatile genome assembly evaluation
...es are to the theoretical optimum, and how far this optimum is from the finished reference. AVAILABILITY AND IMPLEMENTATION: http://cab.spbu.ru/software/quast-lg2031 days ago
MITOS: improved de novo metazoan mitochondrial genome annotation
...tion of metazoan mitochondrial genomes. MITOS is a pipeline designed to compute a consistent de novo annotation of the mitogenomic sequences. The software allows for a systematic error...2030 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide i...2011 days ago
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OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...archers to calculate OrthoANI values between genomes of interest without unfamiliar Command Line Environments. Moreover, the OAT_cmd command-line software can be integrated into preexi...1983 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
The software package SiLiX implements an ultra-efficient algorithm for the clustering of homologous sequences, based on single transitive links (single linkage) with...1983 days ago