3012 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalon...th no arguments. The UCSC Genome Browser and Blat software are free for academic, nonpro...about commercial licensing of the Genome Browser software, se...3003 days ago
2996 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproduc...o perform and support vertebrate comparative genomic analyses. We use robust software and...2992 days ago
2991 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the...tion of transcriptomes from RNA-seq data. Trinity combines three independent software mod...2969 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and...n a standard desktop computer. More at http://www.exelixis-lab.org/web/software/pea...2954 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of...warnings, and produces a new broken assembly based on the error calls. The software req...2954 days ago
2943 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such as...2935 days ago