Results for "Sort"
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...cian/ biological programmers need to expertise in any one one the programming language. However, sometime one language are not enough to handle all sort of biological needs, which co...3953 days ago
- ...Each algorithm has a goal, for example, the purpose of the Quick Sort algorithm is to sort data in ascending or descendi...into another problem. A simple example: finding the median in an unsorted list is first translating t...
3951 days ago
List of In-silico Binding Site Prediction Tools
...ters of residues, at the interface of protein-protein interactions. An assortment of metrics, including cha...rgy-based scores, and sequence conservation, are available to screen and sort clusters of residues. PocketQ...3749 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...samples; detects indels; runs on *nux-like platform Input: BAM (must be sorted and indexed)- Strelka does...allele frequency by considering alpha contamination Input: BAM (must be sorted and indexed- samtools sort)...2914 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort comparison routine variables. @ARGV The command-line args. Regular Express...2649 days ago
Run miniasm assembler on nanopore reads !
...sta ONT_A.fasta -t10 -X > AONT.paf awk '{if($1==$6){print}}' AONT.paf > AONTself.paf awk '$5=="-"' AONTself.paf | awk '{print $1}'| sort|uniq > invertedrepeat.list...2335 days ago
- ...ollowing commands :- Code: $ samtools view -b -S file.sam > file.bam Then you will need to use Code: $ samtools sort file.bam file-sorted followed by Code: $...
2296 days ago
- ...distribution: cat reads.fastq | awk '{if(NR%4==2) print length($1)}' | sort | uniq -c To deinterleave in...; myfile_1.fq) | cut -f 5-8 | \tr "\t" "\n" > myf2.fq To filter and sort contig identifiers from SPAde...
2222 days ago
