2975 days ago
2699 days ago
2690 days ago
2334 days ago
SCUBAT: Scaffolding Contigs Using Blat And Transcripts
SCUBAT (Scaffolding Contigs Using BLAT And Transcripts) uses any set of transcripts to identify cases where a transcript is split over multiple genome fragments and attempts to use this information to scaffold the genome.2242 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...ally effective at more precisely identifying the position of breakpoints stemming from structural variations. The k-mer search helps to detect and split reads that cannot be aligned...2199 days ago
2179 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster spe...wo-step strategy. That is, LAMSA initially splits the read into relatively lon...g a sparse dynamic programming (SDP)-based split alignment approach to handle...2179 days ago
1536 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
...on caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn graph genome-wide break-end assembly, split read, and read pair evidence.1445 days ago