Best book Titles for Learning Bionformatics
...ell, 2003, O'Reilly Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases, Scott Markel, Darryl Leon, 200...y Press DNA Microarrays Statistical Analysis of Gene Expression Microarray Data, T. P. Speed (Editor), 2003, CRC...3931 days ago
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipulating space delimited data. Al...3926 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...tion and experimental design Statistical design and analysis of RNA sequencing data. Auer & Doerge, Genetics...package called FSTpoolit for analysis of the resulting sequence rea...bMed Online resources The R statistical computing environment incl...3793 days ago
List of bioinformatics open source projects/software.
...b/Software.html Metagenomics analysis software Anduril http://www.an...-based workflow framework for data analysis Armadillo workflow platf...cess to more than 150 genomic analysis tools GeWorkbench http://wi...xploration of diverse genomic data IntAct http://www.ebi.ac.uk/int...3771 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ternate splicing from RNA-Seq data http://cbil.upenn.edu/beers/BOTTLENE...n size reductions from allele data frequencies http://www.ensam.inra.fr...allow one to investigate the statistical properties of such samples...odel for population viability analysis (PVA). http://www.vortex9.org...3751 days ago
List of In-silico Binding Site Prediction Tools
...x.php?home is a gold-standard dataset of biologically relevant binding...query protein to members of a database of protein 3D structures and...n structure visualization and analysis but has been used more often...ween surfaces from coordinate data supplied in a PDB file. MSPocket...3758 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help y...o manage your systems effectively and handle huge amount of genomic/biological data wit...3719 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized"...3642 days ago
Next generation sequencing in R or bioconductor environment
...bioconductor packages for NGS data analysis, some of them are as foll...data. Documentation ChIP-Seq Analysis Packages Bioconductor provid...kov models (HMM) and Bayesian statistical methods. The following sam...ing sample code uses the test data set from the above BayesPeak pack...3638 days ago
Commercial and public next-gen-seq (NGS) software
...or Next Generation Sequencing data analysis. JMP Genomics - Next gen...Illumina, SOLiD and Roche-FLX data formats and allows the user to mo...e genomes, and carry out post-analysis. ZOOM is developed to be high...pecifically optimized for the analysis of large numbers (millions) o...3533 days ago