Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering ba...organisms from V1.1. Examples to download database as simple text file using GeneSCF "prepare_database" module, 1) https://www.b...ent tools is that, it performs enrichment analysis in real-time (v1.1 and above)...2886 days ago
2120 days ago
2883 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a fi...ory saving and convenience of data inquiry, high-throughput short reads data is always initially formatted...embly accuracy for downstream analysis. It combines the information...ide Assembler for Metagenomic Data SFA-SPA is a suffix array base...2700 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be execut...endif 5. Larger example: NOTE: NEVER ANY DATA DECLARATIONS IN PSEUDOCODE...iscussed ahead) in your pseudocode. Do not include data dec...2673 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The...erefore the fragment size distribution can be learned empirically for each WGS data set...2536 days ago
Awesome perl frameworks, libraries and software - PART 1
...ver for the MySQL and MariaDB databases beide/Bootimg-scripts&n...plication that serves KeePass database entries on a web frontend...eration Sequencing (NGS) data analysis masukomi/jsonpath-perl ...or High Throughput Sequencing analysis gbarr/perl-libnet - per...2503 days ago
2503 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...m, resulting from a cladistic analysis, which depicts a hypothet...and (by reference to sequence data banks) for discovery of identitie...s. ingroup -- In a cladistic analysis, the set of taxa which are hy...haracters used in a cladistic analysis, either original or derived....2476 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rap...from unassembled raw sequence data from whole genome sequencing...ing SNPs (based on k-mer analysis) Software (C) https://sourc...omic assignment in metagenome analysis by exact k-mer search; L...2385 days ago