Results for "String"
Blogs
Five unique traits of effective computational biologist
...er learned it a year before because it looked interesting; and the great biological programmer also read about the BioPerl packages, genomics, DNA string, genomic theories, or some si...3946 days ago
String graph based genome assembly software and tools !
...easons. i) it give different "string graph" prospective of long la...uction approach called ‘string graph’. Following are...into problems. 2. SAGE: String-overlap Assembly of GEnomes&n.... If you want to learn about String Graph assembler, please read...2324 days ago
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Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3945 days ago
Bioinformatics Algorithm Demonstrations and Tutorials
...that is easily comprehensible to users with little programming experience. The algorithms demonstrated include two approaches to approximate string matching (dynamic programming...3700 days ago
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Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly r...3948 days ago
Pages
Bio++ : C Language libraries for your biological need
...iles, probability distributions.etc. Utils Files: working on file paths, getting file extensions and names, testing existence, open and store in string arrays, etc.Text: convert tex...3943 days ago
- ...ommand-name$ history | egrep -i 'scp|ssh|ftp'Emacs Line-Edit Mode Command History SearchingTo get previous command containing string, hit [CTRL]+[r] followed by search string:(reverse-i-search): To get pr...
3610 days ago
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Top-level pages
Best book Titles for Learning Bionformatics
..., Dennis Elliott Shasha (Editors), 1999, Oxford Univ Press Time Warps, String Edits, and Macromolecules: Th...logy, Joao Meidanis, Joao C. Setabal, 1997, PWS Pub. Co. Algorithms on Strings, Trees, and Sequences: Compu...3913 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...& Durbin, Genome Research 22:549-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which...ndex of the 1.2 billion reads] Readjoiner: a fast and memory efficient string graph-based sequence assemble...3775 days ago
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Wire posts
News
BEReX : Biomedical Entity-Relation eXplorer
BEReX is a new biomedical knowledge integration, search, and exploration tool. BEReX integrates eight popular databases (STRING, DrugBank, KEGG, PharmGKB, BioGRID, GO, HPRD, and MSigD...3835 days ago
Roche has acquired Bina Technologies !!!
...onate about accelerating that future together with Roche.Financial details of the deal were not disclosed. For Roche, the move is yet another in a string of acquisitions. Last week (D...3409 days ago
Opportunity posts
PostDocs positions in computer science in HELSINKI, FINLAND
...care system, including exceptionally good parental leaves, and children's day care services. Positions are offered in: Algorithm engineering (String Algorithms group) Algorithmi...3889 days ago
Bio-Scripts
- ...e Tie::Autotie Tie::IxHash Log::Log4perl FindBin::Real Getopt::Long Catalyst::Runtime Catalyst::Devel List::Util Test::XML::Simple Test::XPath IO::String Bio::Perl version # Set $P...
2140 days ago
Perl script to Mutate a DNA Sequence
...urrent_base); substr($dna,$position,1,$newbase); return $dna; } sub randomposition { my($string) = @_; return int rand length $string; } sub randomelement {...2911 days ago
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Groups
...Wall in 1987 as a general-purpose Unix scripting language to make report processing easier. But, nowadays perl is the heart of biological/genomic string handlings. This group is de...3948 days ago
Tags
NextDenovo: string graph-based de novo assembler for TGS long reads
NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After assembly, the per-base error rate is about 97-98%, to further improve single base ...Tags: NextDenovo, NextOmics, string, graph-based, de novo, assembler, TGS, LongReads, assembly, long, reads
1578 days ago
Comments
- DeepConflation based CNN model is used to generate alignment of fasta file . Model try to match a query string in a referance genome to provide location of match. https://github.com/gguptaiitd/DeepConflation
1142 days ago
- ...d: '4.7m' equals '4700k' equals '4700000' Some common options: useGrid=string - Run under grid control (tru...ts are 0.045 for PacBio reads and 0.144 for Nanopore reads. gridOptions=string - Pass string to the command...
2094 days ago
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