Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one-lin...2274 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled...844 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about a...p;http://www.bestprogramminglanguagefor.me/why-learn-python and http://bioinformaticsonline.com/discussion/view/459...2249 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Re...s of genome annotations | BMC Bioinformatics | Full Text https://bmcbioin...2235 days ago
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Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions, an...2196 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina...lear.com/landingpages/basetools-a-wide-range-of-bioinformatics-solutions/sspacev12/), ATLAS...useful explanation of several tools. https://bioinformaticsonline.com/search?q=scaffoldin...2159 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source,...ures and packages of python which are widely used in the big data, NGS, and bioinformatics. I will also walk through a r...2176 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fast...2104 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple processors for bioinformatics analysis. One best way is usi...ul before reading this tutorial. Many times in bioinformatics we need to deal with huge dat...2074 days ago