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Results for "Symbol IDs Convert"

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• • Neelam Jha@neelam

  

  sed -i -e '/^+/,/^\@/{/^+/!{/^\@/!d}}; /^+/ d; s/@/>/g' OUTPUT.fastq > out.fa #Convert

  2162 days ago

• • Neelam Jha@neelam

  

  #Convert a #multi-line #fasta to a #singleline #fasta $ awk '!/^>/ { printf "%s", $0; n = "\n" } /^>/ { print n $0; n = "" } END { printf "%s", n }' sample1.fa > sample1_singleline.fa

  2162 days ago

• • Poonam Mahapatra@poonam

  

  Convert fasta to 2bit $ faToTwoBit myAssembly.fa myAssembly.2bit #Fasta #2bit #Convert

  2190 days ago

• • Poonam Mahapatra@poonam

  

  Convert 2bit to psl $ blat myAssembly.2bit -oneOff=0 -noHead myQueryContigSeqs.fa myHits.psl #Convert #psl #2bit #blat

  2190 days ago

• • Aaryan Lokwani@aaryan

  

  #Scientific #converter https://www.rapidtables.com/convert/number/scientific-notation-converter.html

  2153 days ago

• • Jit@jit.aber

  

  perl -e '$/="\n>"; while (<>) { s/>//g; my ($id, $seq) = split /\n/; print ">$_" if length $seq; }' < all_p_ctg.fasta > all_p_ctg_corrected.fasta #Convert #Fasta #Zero

  2147 days ago

• • Rahul Nayak@rahul

  

  Get unique ids from column 1 in Linux. $ cat output_file | cut -f 1 | sort | uniq > allUniqOUT #Unique #Linux #Cut

  2147 days ago

• • Neelam Jha@neelam

  

  Multifasta to singleline fasta. $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa #Multi #Single #Fasta #Convert

  2051 days ago

• • Neelam Jha@neelam

  

  BAM2BED conversion bamToBed -i overall_exp_genome_rep1.bam > alignment.bed #Bed #bam #bamToBed #convert

  2034 days ago

• • Jit@jit.aber

  

  Tab file to FASTA file $ awk '{print ">"$1"\n"$2}' allSeq_tm.txt > allSeq_tm.fa #Fasta #Tab #Convert #Tab2Fasta

  2030 days ago

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