Results for "Synteny Blocks"
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Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Grou...ages: Satsuma, a highly parallelized program for high-sensitivity, genome-wide synten...3001 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates...ple whole-genome alignments from which large-scale synteny, per-base conservation scores...-based visualizations are also available including synten...2982 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only...E., Alföldi, J., Di Palma, F., & Lindblad-Toh, K. (2010). Genome-wide synten...2907 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is c...d technique named Near HGT, based on the synteny index, to measure the diverge...xhibiting exceptional deviations according to both synten...
2867 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaf...ly use the output of MUMmer), physical mapping data, or information about gene synten...
2812 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering c...2727 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to i...ns of similarity and difference between genomes and to explore conservation of synten...
2790 days ago
- Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broa...;Satsuma, a highly parallelized program for high-sensitivity, genome-wide synten...
2708 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is rei...ure of the question that can be investigated. Here we present Genomicus, a new synten...
2690 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal...the two assemblies representing the same genomic locus (called blocks) are identified through reads...2687 days ago
