2635 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
...rokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQ...2618 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary alg...2547 days ago
2492 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...ture. Availability and Implementation The software is implemented in Python 3 and runs in both Python 2.7 and 3.4– on Macintosh and Linux systems. It is freely available at&nb...2365 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...e Alignment of LC/MS Peak Lists. The package contains C++ source code as well as two binary files. The latter were tested under various operating systems, including Windows XP SP3 32b...2355 days ago
Mash: fast genome and metagenome distance estimation using MinHash
...pendency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requ...2336 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...s tools and methods from Juicer (Durand & Shamim et al., Cell Systems, 2016) and Juicebox (Durand & Robinson et al., Cell Systems, 2016), as well as additional...2321 days ago
EAGLER: a scaffolding tool for long reads.
...cBio and Oxford Nanopore reads. The tool should be compatible with most UNIX flavors and has been successfully tested on the following operating systems: Mac OS X 10.11.1 Mac OS...2163 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...y other operating system. Source codes for all programs are provided under GNU license, which makes it possible to transfer the programs to other systems if so desired. We here demons...2083 days ago