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Results for "TAGC Plot"

Bio-Scripts

• • Neelam Jha@neelam

  

  Download genome using NCBI esearch command line !

  #Download using command line "NC_005956.1" / "CP003784.1" esearch -db nuc...fastani fastANI -q seq1.fa -r seq2.fa --visualize -o fastani.out #Plot using sequences Rscript plotSeq.R seq1.fa seq2.fa fastani....

  1115 days ago

• • Abhimanyu Singh@abhimanyu

  

  DotPlot with Perl GD

  #!/usr/local/bin/perl -w # NOTE: YO...that displays a triangular dot plot of the input sequence against itself, or a square plot against a second sequence w...ff. Completed runs can be re-plotted from the existing dot fi...g, $outfile); print "Plot Complete!\n"; } sub p...

  2707 days ago

• • Abhimanyu Singh@abhimanyu

  

  DotPlot with Perl

  #!/usr/bin/perl use strict;use warnings; my $i;my $j;my $a; open (FH1,'

  2707 days ago

• • Abhimanyu Singh@abhimanyu

  

  Transpose the file coordinates and plot dendrogram in R

  #Save this as tr.awk { for (i=1; i

  2631 days ago

• • Jit@jit.aber

  

  Plot the clock using Lastz -gerenal outfile

  use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my...

  2313 days ago

• • Abhimanyu Singh@abhimanyu

  

  Plot the density of genes in R

  #column1 = chromosome name and column2 = st...t position of the gene # check if ggplot2 is installed, if so, load it...# if not, install and load it if("ggplot2" %in% rownames(installed.pac...t2) } else { install.packages("ggplot2") library(ggplot2) }...

  2298 days ago

• • Rahul Nayak@rahul

  

  Estimate Genome Size

  # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19

  2278 days ago

• • Rahul Nayak@rahul

  

  Plot dotplot with last !

  # generate dotplot lastdb test/ref.fa lastal -f TAB test/ref.fa test/contigs.reduced.pacbio.fa | last-dotplot - test/contigs.reduced.pacbio.fa.ref.png lastal -f TAB test/ref.fa test/contigs.reduced.nanopore.fa | last-dotplot - test/contigs.reduced.nanopore.fa.ref.png

  2266 days ago

• • Jit@jit.aber

  

  Plot custom gene density with R

  library(karyoploteR) pp

  2264 days ago

• • Rahul Nayak@rahul

  

  Estimate Genome Size with Jellyfish and R

  jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/...hred” score, where "?" = 30 jellyfish histo -o 19mer_out.histo 19mer_out #Plot dataframe19...

  2260 days ago

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