Results for "TE"
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...figurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER ident...3022 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
3022 days ago
- RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first dev...P. berghei, between different Leishmania species or Salmonella enterica onto other Salmonella ser...
3022 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
3021 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3021 days ago
- ...gram for convenient conversion of genome coordinates (or annotation files) betwee...CrossMap is designed to liftover genome coordinates between assemblies. It&rsquo...commend using CrossMap to convert genome coordinates between species. More at ht...
3021 days ago
- ...variation among strains, including large event detection Pilon requires as inp...uses read alignment analysis to identify inconsistencies between the input genome...w gaps More at https://github.com/broadinstitute/pilon/wiki
3021 days ago
- ...of software tools, developed and used by the Vertebrate Genome Biology Group at the B...ed program for high-sensitivity, genome-wide synteny; Papaya, an all-purpose ali...cess Spines here. http://www.broadinstitute.org/science/programs/genome-b...
3021 days ago
- ...assembly for the species and good quality annotations (maybe manually curated or experimentally verified)...one (e.g., with BLAT), process the alignment data to define how a coordinate or coordinate range on the ol...
3019 days ago
- ...conversions between a pair of genome assemblies but it uses different methods to achieve these mappings. It is also available through a simple web interface or you can use the API f...
3018 days ago
