Results for "TE"
Top-level pages
Binding Site Prediction in Protein !
...can assist in prediction of interaction sites on protein surfa...icting the structure of the intermolecular complex formed betw...of pockets and cavities in proteins structure, and quantitatio...sp; Ligand Binding Sites 3DLigandSite ...2216 days ago
Protein-Protein Interaction Sites Predictions !
...ion partners of a specific protein and the amino acid residues...thways, which in turn facilitate the understanding of many bio...OINT Prediction of protein interfaces using an empirical mode...DBPs Predicts DNA binding proteins for proteins with known 3D...2216 days ago
Ligand Docking Tools and Software !
...free (at least for academic institutes) and/or popular docking tool...ially flexible target ArgusLab Systematic Flexible ligandX-Score...etHiTS_Score (empirical) FlexX Systematic (IC)Flexible ligandFlexX...EMPLP, PLP (empirical) Surflex Systematic (IC/MA)Flexible ligandHa...2216 days ago
Tools for Protein-Protein Docking !
...redicting the structure of protein–protein complexes using docking app...rostatics Re-scoring and clustering. Refinement of interface...rigid search: FFT. smooth protein surface representation for...l rigid rotations around selected conformations PatchDock Gl...2216 days ago
- ...nts-mathjax ipython ipython-notebook ipython-notebook-common i...nial/universe amd64 ipython-notebook-common all 2.4.1-1 [712 k....ubuntu.com/ubuntu xenial-updates/main amd64 python-tk amd64 2.....Selecting previously unselected package python-sympy-doc.Pre...
2204 days ago
Creating conda environment for python2.7
...([y]/n)? This creates the myenv environment in&nbs...ipy OR: conda create -n myenv python conda instal...ges flag: conda create --no-default-packages -n myen...################## | 100% sqlite 3.23.1: #####################...2204 days ago
Learning Python Programming - a bioinformatician perspective !
...mmunity It has a couple of very well designed libraries for doing complex scientific computing (although we won't encounter them in this book) It lend itself well to being integrated with other, existing to...2196 days ago
Convert VCF to tab-deilimited table
...\ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o reference_genomes_GT.table multiple_sample.vcf should also be converted to multiple_sample_GT.table...2196 days ago
Ancestral sequence reconstruction steps !
...rresponding ancestral protein. The idea of protein '...ed by the laboratory of Steven A. Benner, showing the pot...mechanisms and dynamics of protein evolution. B...ad" 4.5- Path-o-Gen (temporal structure of a tree inp...2193 days ago
Gap filling or Contigs extensions tools !
...2/), ATLAS tools (http://www.hgsc.bcm.tmc.edu/content/bcm-hgsc-software), and SCA...nario appear to miss the point that you aren't interested in assembling the full...ise, Set S = S'. 3. If you don't have a complete assembly of the region of int...2179 days ago
