Results for "TEs"
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About me: ...informaticsonline.com/about Within the broad domain of bioinformatics and computational biology, I mainly focus on chromosomal breakpoint and amniotes evolution. I (We) develop cer...23 days ago
- About me: https://sites.google.com/site/seqomics/home http://about.me/vibes100
1375 days ago
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Bookmarks
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
...ine designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes si...2359 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of mobiliza...habits, they are known as selfish genomic parasites. Despite their capacity for t...updated repository of HTT events in all eukaryotes, allowing not only TE special...2307 days ago
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Top-level pages
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated increasing interest i...2287 days ago
Wire posts
ResearchLabs posts
- ...gions of the genome including conserved noncoding sequences (CNSs), cis-regulatory modules (CRMs), transcription factor binding sites (TFBSs), transposable elements (TEs) and noncoding RNA (ncRNA) ge...
3880 days ago
Tags
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
Tags: Bioinformatics, Analysis, NGS, TEs, TEannot, REPET, Pipeline, Repeats, Genome
2830 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not requ...Tags: dnaPipeTE, pipeline, find, annotate, quantify, Transposable, Elements, TEs
1741 days ago
