Perl one-liner for bioinformatician !!!
...f /regex/' #Number and print only lines that match a patternperl -ne 'printf "%-5d %s", $., $_ if /regex/'...#Left align lines with 5 white spaces if matches a pattern (perl -ne 'printf "%-5d %s", $., $_' : for all...3627 days ago
Next generation sequencing in R or bioconductor environment
...t and outputs short DNA sequences that are overrepresented in some part of the list. The algorithm was developed for detecting transcription factor (TF) binding sites in a large num...3624 days ago
Commercial and public next-gen-seq (NGS) software
...o map short reads generated with the Illumina platform to reference genome assemb...SXOligoSearch - SXOligoSearch is a commercial platform offered by the Malaysian b...and Visualization Tool. It provides a generic platform for manipulating, analyzin...3518 days ago
Rosalind Problem Solution with Perl
Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. Bioinformatics Textbook Track...3252 days ago
Software packages for next gen sequence analysis
...o map short reads generated with the Illumina platform to reference genome assemb...SXOligoSearch - SXOligoSearch is a commercial platform offered by the Malaysian b...and Visualization Tool. It provides a generic platform for manipulating, analyzin...3242 days ago
Comprehensive list of visualization tools for biological pathways
...ngs of genes http://www.genmapp.org/ Ingenuity IPA Data integration platform and manually annotated pat.../www.reactome.org/skypainter-2 WikiPathways Wiki-based, open, public platform dedicated to the curation...2286 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...D™ and Illumina® platforms.” runs on Windows,...established NGS sequencing platforms- SOLiD, 454 Life Sciences...to run on “nux-like platforms” Input: BAM Outpu...input formats (ped/map, tped/tfam, bed/bim/fam) Compatible wi...2908 days ago
Worldwide funding agencies to fund your bioinformatics research !!
....S.A. and International non-profit and for-profit institutions. The March of Dimes: In keeping with its mission the March of Dimes research portfolio funds many different area...2937 days ago
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