Results for "TF"
Bio-Scripts
Installing Busco version 4.0.6
...-3.0.1 | r36hcdcec82_1 382 KB conda-forge r-utf8-1.1.4 | r36hcd...tibble conda-forge/linux-64::r-tibble-3.0.1-r36hcdcec82_1 r-utf8 conda-forge/linu...1463 days ago
- ...lects reference and alternate allele counts at specified sites CollectFragmentCounts...aluate concordance of an input VCF against a validated truth VCF CountFalsePositives...
2086 days ago
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2066 days ago
Installing pb-assembly on Linux !
...asm) [jnarayan@hmem00 ~]$ conda install -c bioconda pb-assembly Fetching package metadata ........... Solving package specifications: PackageNotFoundError: Dependencies missin...2045 days ago
- ...dCommandLine.o ReadCommandLine.c ReadCommandLine.c: In function ‘ReadInputFileComplexes’: ReadCommandLin...otypes -Wmissing-declarations -I../../../src/shared/constants -c -o InputFileReader.o InputFileReader.c...
2037 days ago
- ...htslib-1.9/htslib/klist.h htslib-1.9/htslib/knetfile.h htslib-1.9/htslib/kseq....tslib_vars.mk htslib-1.9/kfunc.c htslib-1.9/knetfile.c htslib-1.9/kstring.c h...aster) ✗ ls bcf_sr_sort.c hfile_internal.h knetfile.c sam.c bcf_sr_sort.h...
2030 days ago
Installing Platypus on Ubuntu !
...func.o kfunc.c gcc -g -Wall -O2 -I. -c -o knetfile.o knetfile.c gcc -g -Wall -O2 -I. -...soname,libhts.so.2 -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_s...conda3/envs/py27/include/python2.7 -c tabix/knetfile.c.pysam.c -o build/temp.li...2029 days ago
Perl script to count occurrence of a character !
#!/usr/bin/env perl # -*- coding: utf-8 -*- #!/usr/bin/perl use strict; use warnings; my %count_of; while ( ) { my @val = split "\t", $_; #my ( $word) = m/(\...1911 days ago
Perl script to run in parellel !
...ters $chr_set!\n"; } sub touch { my ($fn, $seq) = @_; open FILE, ">$fn" or die $!; system ("augustus --species=caenorhabditis --outfile=$fn $seq --AUGUSTUS_CONFIG...1697 days ago
Bash command to install GATK, Bedtools and SnpEff !
...| r36h96ca727_0 316 KB r-utf8-1.1.4 | r36...s/r/linux-64::r-tibble-2.1.1-r36h96ca727_0 r-utf8 pkgs/r/linux-64:...#################################### | 100% r-utf8-1.1.4 | 159 KB |...1566 days ago
