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• • Rahul Nayak@rahul

  

  Galaxy is an open, web-based platform for data intensive biomedical research https://galaxyproject.org/ #Galaxy #OpenSource #Analysis #Online

  3251 days ago

• • Rahul Nayak@rahul

  

  Sort FASTA sequence by length: cat f1.fasta| awk '{if($0 ~ /^>/){printf "%st", $0}else{print length($0)"t"$0}}'| sort -k2n,2| awk '{print $1"n"$3}' > sequence.fasta #Sort #Fasta #Trick #Onliner

  3190 days ago

• • Abhinav@abhinav

  

  PLATform for Assembling NUcleotide Sequences http://platanus.bio.titech.ac.jp/ #Platanus #Assembler #Genome

  2953 days ago

• • Poonam Mahapatra@poonam

  

  Replace space with tab: perl -lpe 's/\s/\t/g' < trf_file.dat > outfile.txt #TRF #Tab #Space #Replace #Perl #PerlTrick #PerlOneliner

  2831 days ago

• • Jit@jit.aber

  

  Accept file from STDIN in Perl my $infh = \*STDIN; my $outfh = \*STDOUT #Perl #Tricks

  2698 days ago

• • Jit@jit.aber

  

  Get the fasta sequence of the coordinates http://bedtools.readthedocs.io/en/latest/content/tools/getfasta.html #Fasta #Bed #Coordinates #Bedtools

  2616 days ago

• • Abhimanyu Singh@abhimanyu

  

  #Random #sequence generator with #perloneliner : $ perl -e '$x=int(rand(1000)); printf( "chr1\t%s\t%s", $x, $x + 10)'

  2611 days ago

• • Jit@jit.aber

  

  To add something to end of all header lines: $ sed 's/>.*/&WHATEVERYOUWANT/' file.fa > outfile.fa #Add #Fasta

  2572 days ago

• • Jit@jit.aber

  

  R library that can create a sunburst plot https://github.com/timelyportfolio/sunburstR #R #SunBurst #Plot

  2552 days ago

• • Jit@jit.aber

  

  NGS onliner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/subsetFASTAFASTAQ.html #OneLiner #NGS

  2561 days ago

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