Computational Genomics: Applied Comparative Genomics
...mparing and analyzing genomes starting from raw sequencing data. The course will focus on human genomics and human medical applications, but the techniques will be broadly applicable ac...2361 days ago
Musket: a multistage k-mer spectrum based corrector
...ror correction algorithm targetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our...2354 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...ymbols from the given pair of sequences (protein or nucleotide) and results in an optimal alignment faster than conventional dymanic programming techniques. It is also better than the h...2351 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...ovo non-progressive fashion allows to simultaneously work with scaffold assemblies obtained from any in silico and in vitro techniques, supporting multiple existing...2332 days ago
mojolicious: a next generation web framework for the Perl programming language.
...to get started without knowing much about the language and powerful enough to keep you going, learning by doing was much fun. While most of the techniques used are outdated now, the id...2316 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...ely spliced isoforms and expression levels while utilizing as many RNA-Seq libraries as possible that contain hundreds of gigabases of data. New techniques are developed so that computa...2145 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...oth technologies and the more erroneous long reads are corrected using the short reads. Current approaches rely on various graph based alignment techniques and do not take the error pro...2097 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological d...bout probabilistic models and machine learning techniques. We will focus on probabilist...is and systems biology. Other machine learning techniques, such as Naive bayes, neural...1598 days ago
Musket - a multistage k-mer spectrum based corrector
...ror correction algorithm targetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our...1563 days ago
981 days ago