repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two cont...2250 days ago
SimLoRD: A read simulator for third generation sequencing reads
SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Bioscien...DNA), sampling from an existing FASTQ file (typical for RNA), sampling from a a text f...2096 days ago
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ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and o...ary sequence alignment data which users can uploaded from BAM, BED, GFF and tab-text f...1961 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of obt...s by: Learning locus-specific PCR stutter models using an EM algorithm Mining candidate STR alleles from po...1898 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment,...1881 days ago
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ALF--a simulation framework for genome evolution.
Artificial Life Framework (ALF) simulates a root genome into a number of related genomes. Result files include the resulting gene sequences, true tree and true MSAs. A...1669 days ago
Far Manager Commands and Links !
Far Manager is a program for managing files and archives in Windows operating systems. Far Manager works in text m...1425 days ago