Python learning resources for bioinformatics and computational biologist !
...p;(Source) The Programming Historian - William J. Turkel, Adam Crymble and Alan MacEachern The Python Ecosystem: An Introduction The Python GTK+ 3 Tutorial The Standard Pyt...2265 days ago
2200 days ago
Creating conda environment for python2.7
...nssl: 1.0.2o-h20670df_0 pip: 10.0.1-py27_0 python: 2.7.15-h1571d57_0 readline: 7.0-ha6073c6_4 setuptools: 39.1.0-py27_0 sqlite: 3.23.1-he433501_0 tk: 8.6.7-hc745277_3 wheel: 0.3...2200 days ago
Convert VCF to tab-deilimited table
Performed with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o referenc...2192 days ago
List of non-commercial NGS genotype-calling software
...ckage for manipulation of NGS alignments, which includes a computation of genotype likelihoods (samtools) and SNP and genotype calling (bcftools) GATK http://www.broadinstitute.org...2106 days ago
Tools for Geospatial data analysis !
...RTree - https://lnkd.in/dURMiYpU Rasterio - https://lnkd.in/dEMC6ve6 Scikit-mobility - https://lnkd.in/dpHhaX2J Shapely - https://lnkd.in/d568datK These tools offer a wide r...420 days ago