MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genome...2488 days ago
LIBSVM -- A Library for Support Vector Machines
...6, 1889-1918, 2005. You can also find a pseudo code there. (how to cite LIBSVM) Our goal is to help users from other fields to easily use SVM as a tool. LIBSVM provides a...2480 days ago
2474 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for comparative genomics. Various processes including...2371 days ago
2370 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...calable bank-to-bank sequence similarity search tool providing significant acceler...r Parallel Local Sequence Alignment Search Tool and is was publishe...PLAST is a general purpose sequence comparison tool providing the following benef...2359 days ago
2349 days ago
Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users can zoom in to s...2356 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
An efficient tool called Connecting Overlapped Pair-End (COPE) read...d reads using k-mer frequencies. We evaluated our tool on 30× simulated pair-e...ely, 10 and 2% higher than the recently published tool FLASH. When COPE is applied t...2354 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is specifically designed for al...rameters, particularly the gap extension score. As an accurate alignment tool, ACANA is particularly useful...2354 days ago