2944 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...ng tools, MOSAIK can align reads generated by all the major sequencing technologies, including Illumina, Applied Biosystems SOLiD, Roche 454, Ion Torrent and Pacific BioSciences SMRT....2899 days ago
Genome Assembly Tools and Software - PART2 !!
...tgun and EST sequence assembler for Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (the later at...ads. MaLTA – Transcriptome Assembly and Quantification from Ion Torrent RNA-Seq dataMaLTA is a m...2678 days ago
Structure of Binary files used for storing sequencing data-bam and sff
...for those who looking for structure of Bam and sff file: Bam: http://samtools.sourceforge.net/SAMv1.pdf (from page 12) sff file (for Ion torrent and 454 files): http://www.n...3912 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...orts alignment from Illumina, Ion Torrent, 454 (Roche), and Pac Bio DN...ystem from Life Technologies, Ion Torrent system from Life Technologies...r NGS technologies (Illumina, Ion Torrent, Pac Bio and Roche 454) and p...Genome Analyzer, HiSeq, MiSeq, IonTorrent Software Suite: can upload s...2901 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest TMAP is unsupported. To use a supported version, please see the TMAP version associat...Tags: Bioinformatics, Torrent, Mapping, Tools, TMAP
2582 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up to ∼98% reduction of false variants when combined to conventional public pipelines and ∼48% to the in-hou...Tags: AIRVF, filtering, toolbox, precise, variant, calling, Ion, Torrent, sequencing
2319 days ago
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