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Results for "Transcriptomes"

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• • Surabhi Chaudhary@surabhi

  

  RNA-Seq De novo Assembly Using Trinity

  ...t the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity co...

  2978 days ago

• • Rahul Nayak@rahul

  

  ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly

  With increased availability of de novo assembly algorithms, it is feasible to study entire transcriptomes of non-model organisms. While algorithms are available that are specifically desi...

  2146 days ago

• • Rahul Nayak@rahul

  

  RapClust: Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes

  RapClust is a tool for clustering contigs from de novo transcriptome assemblies. RapClust is designed to be run downstream of the Sailfish or Salmo...

  2053 days ago

• • Jit@jit.aber

  

  CroCo: A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification

  ...roCo is a program to detect cross contamination events in assembled transcriptomes using sequencing reads to det...ss samples using a pairwise BLAST procedure. CroCo then combine all transcriptomes into a metatranscriptome and...

  1958 days ago

• • Jit@jit.aber

  

  alien_index : identify potential contaminants or horizontally transferred genes in transcriptomes.

  identify potential contaminants or horizontally transferred genes in transcriptomes. algorithm is based on alogorithm described in the following: Gladyshev, Eugene A., Matthew Meselson,...

  1567 days ago