2578 days ago
2533 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and compu...2514 days ago
slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written i...2503 days ago
iTOL: Interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic trees. Explore your trees directly in the browser, and annotate...2488 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a se...2481 days ago
2468 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the course empowered to conduct independent genomic analyses. We will study the lead...2354 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a...2349 days ago
TeachEnG: Teaching Engine for Genomics
TeachEnG (pronounced “teaching”), a Teaching Engine for Genomics, provides educational games to help students and researchers understand key bioinformatics con...2340 days ago