Genome Assembly Tools and Software - PART1 !!
...assembly using multiple references. It takes a short read assembly (a set of contigs), a set of related references and a corresponding phylogenetic tree and then assembles the contig...2681 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...e everything from the origin of man to the origin of life. evolutionary tree -- A diagram which depicts th...p; reticulation -- Joining of separate lineages on a phylogenetic tree, generally through hybridizat...2457 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...encing projects; provides bootstrap support to assess uncertainty in the tree topology (k-mer based) Softw...SNP v3 Reference-free SNP identification and estimation of phylogenetic trees using SNPs (based on k-...2366 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...HGT detection / download binary 18662388 Jane / 4.01 HGT detection / download binary (!license!) 20181081 TREE-PUZZLE / 5.3.rc16...845 days ago
Protein-Protein Interaction Sites Predictions !
...Prediction of protein interfaces using an empirical model ISIS Prediction of interaction hotspots from sequence KFC server Automated decision-tree approach to predicting protei...2197 days ago
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Ancestral sequence reconstruction steps !
...--genafpair Dataset.fasta > Dataset_Alig.fasta 2- Your dataset has a good phylogenetic signal, is possible to perform with Tree-Puzzle "http://www.tree-puzzle.de"; 3 - This...2174 days ago
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Frequent parameters for bioinformatics tools !
...-nodownload -no-intron -no-downstream -no SPLICE_SITE_REGION -upDownStreamLen 250 bcftools consensus (phylogenetic tree) --haplotype 1 fasttreemp -nt -boot 100 ro...1280 days ago