2522 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is prese...ally undemanding. It can be combined with genomic signature and/or phylogenetic tree-...2503 days ago
slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was origin...blication quality figures of circular trees with more than 1000 taxa wit...very small representations of entire trees...2492 days ago
iTOL: Interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic trees. Explore your trees directly in the browser, and...adograms or phylograms, exploring and navigating trees...2477 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction o...nomes at the internal nodes of the phylogenetic tree. The phylogenetic tree may be also specified complet...lso can reconstruct most plausible phylogenetic tree...2470 days ago
2457 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outp...2345 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the course empowered to conduct...medical applications, but the techniques will be broadly applicable across the tree...2343 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical...lly produces evolved sequences based on source genomes and a given evolutionary tree....2338 days ago
TeachEnG: Teaching Engine for Genomics
TeachEnG (pronounced “teaching”), a Teaching Engine for Genomics, provides educational games to help s...nt version includes interactive modules for sequence alignment and phylogenetic tree...2329 days ago