Results for "Trimmomatic"
Blogs
...lugins/ParaFly-0.1.0' make[2]: Leaving directory '/home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity-plugins/ParaFly-0.1.0' ln -sf Trimmomatic-0.36 Trimmomatic make[1]: Leaving directory '...2133 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...d files.This function trims adapters, barcodes and other contaminants from the reads.Scripthttps://bioinformaticsonline.com/snippets/view/42542/trimmomatic-command Genome Assembly:The...1205 days ago
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Bookmarks
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_fo...6 bases long (MINLEN:36) More at http://www.usadellab.org/cms/?page=trimmomatic2942 days ago
Top-level pages
Frequent parameters for bioinformatics tools !
Third party executable parameters and options. Trimmomatic “ILLUMINACLIP:...:2:30:10” “LEADING:15” “TRAILING:15” “SLIDIN...1286 days ago
Bio-Scripts
Install trimmomatic using conda !
(JitMetaENV) ➜ fastQC_out conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1217 days ago
- (JitMetaENV) ➜ fastQC_out trimmomatic SE -phred33 SRR5322499_1.fastq out.trimmed.f...G:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 TrimmomaticSE: Started with arguments:...rviving: 72865 (99.99%) Dropped: 10 (0.01%) TrimmomaticSE: Completed successfully
1217 days ago
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Tags
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 ...Tags: Bioinformatics, Trim, NGS, Illumina, Reads, Trimmomatic
2942 days ago
Comments
Comment on "Short-read assembly using Spades !"
...raw reads are of high quality and do not contain sequencing errors or low-quality bases. This step can be performed using various tools such as Trimmomatic or FastQC. Running SPAde...416 days ago
