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...ompared to matched background DMPs. It assesses enrichment on a per cell type basis, since functional elements are differentially active in different cell types, and hence can expose tissue...2759 days ago
- ...acy codebase) For the impatient A typical Minia command line looks like: ./minia -in reads.fa -kmer-size 31 -abundance-min 3 -out output_prefix Type ./minia for a quick explana...
2718 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX) ggplot2 (from R prompt type install.packages("ggplot2","proto","x...2717 days ago
- ...nding patches. Language Reference & TutorialsA collection of documents describing, in detail, the various conceptual parts of the language. Type ReferenceIndex of built-in cl...
2662 days ago
- ...ccepted and used to store variants detected. The Cancer Genome Atlas Project has seqenced over 30 different cancers with sample size of each cancer type being over 200. The resulting...
2648 days ago
LIBSVM -- A Library for Support Vector Machines
...lon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification. Since version 2.8, it implements an SMO-type algorithm proposed in this pa...2481 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
...cale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the input-box by selecting the type of identifier and pasting ide...2301 days ago
PhyloGrapher - Graph Visualization Tool
...a drawing tool that generates custom graphs for a given set of elements. In general, it is possible to use PhyloGrapher to visualize any type of relations between elements...2264 days ago
RNA-seq Analysis Workshop Course Materials
RNAseq can be roughly divided into two "types": Reference genome-based - an ass...into transcripts using de novo approaches. This type of RNAseq is as much of an ar...son we will focus on the Reference genome-based type of RNA seq. http://chagall...2146 days ago
- Hilbert curve is a type of space-filling curves that folds one dimensional axis into a two dimensional space, but still keeps the locality. It has advantages to visualize dat...
2070 days ago
