Results for "UCSC"
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Public Databases for Bioinformatics !
...e human genome version hg38 was obtained from http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/h...e human genome version hg19 was obtained from http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/h...1135 days ago
Encode sequencing data freely available to download and use for academic means
...hat interact with DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: https://genome.ucsc.edu/ENCODE/pilot.html3702 days ago
UCSC Genome Browser and Blat software !
...e application can be viewed by running the binary with no arguments. The UCSC Genome Browser and Blat softw...t commercial licensing of the Genome Browser software, see http://genome.ucsc.edu/license/. The Blat and In...2995 days ago
- GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Data Working Group (DWG) of the Global Alliance brings together the leading Genome I...
2964 days ago
Stand-alone programs for Bioinformatician
...lone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc.edu/goldenPath/help/bigWig.ht...2902 days ago
- ...read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be u...
2736 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python 2.7 wget 64bit processor and buil...
2661 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...(iii) analyses on insertion/deletion polymorphism data; (iv) visualizing sliding window results integrated with available genome annotations in the UCSC browser.2641 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...wsing synteny blocks. With Synteny Portal, users can easily (i) construct synteny blocks among multiple species by using prebuilt alignments in the UCSC genome browser database, (ii)...2534 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...ign and visualize conservation profiles for evolutionarily distant and closely related species. Input formats, automated data upload from the UCSC Genome Browser, gene annotati...2477 days ago
