Useful Publications and Websites for Deep Sequencing Data Analysis
...nbow: an integrated tool for efficient clustering and assembling RAD-seq reads. Chong et al, Bioinformatics 28(21):2732-7, 2012. Publisher Website UK RAD Sequencing Wiki page, wit...3779 days ago
List of bioinformatics open source projects/software.
...p://www.broadinstitute.org/igv/ High-performance desktop tool for interactive visual exploration of diverse genomic data IntAct http://www.ebi.ac.uk/intact/ molecular interactio...3756 days ago
List of In-silico Binding Site Prediction Tools
...aset. PDBeMotif: http://www.ebi.ac.uk/pdbe-site/pdbemotif/ is an ex...igandStie: http://www.sbg.bio.ic.ac.uk/~3dligandsite/ is an automate...nder: http://www.modelling.leeds.ac.uk/pocketfinder/ is based on the...SURFNET: http://www.biochem.ucl.ac.uk/~roman/surfnet/surfnet.html T...3743 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...below is based on the algorithm described in Padhukasahasram et al. 2008 to simul...in large diploid populations. http://www.ebi.ac.uk/projects/bargen/download/freg...erienced natural selection http://www.well.ox.ac.uk/~spencer/selsim/Seq-Gen An ap...3737 days ago
Commercial and public next-gen-seq (NGS) software
...llumina and SOLiD data.NCGR uses GMAP (http://www.gene.com/share/gmap/) to alignment Solexa reads. GMAP is free, though.Exonerate (http://www.ebi.ac.uk/~guy/exonerate/) MUMmer (http...3518 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
...Devi Ahilya University Dr. C.V. Raman University Dr. Panjabrao Deshmukh Krishi Vidyapeeth Dr.B.R....ty Mangalore University Manonmaniam Sundaranar University Mohanlal Sukhadia University Mother Tere...2570 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq sof...3242 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biologic...2908 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...death, and intercellular signaling in striatal neurons. The Childrens Leukemia Research Association:&nbs...CLRA is to direct the funds of the Association into the most promising leukemia research projects, and wh...2937 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassocia...2211 days ago