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Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list...2202 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutio...2202 days ago
Ancestral sequence reconstruction steps !
...Beast and TreeAnnotator), and Tracer_v1.5 more FigTree to inspection. - Tutorials: http://beast.bio.ed.ac.uk/tutorials - Downloads: http://beast.bio.ed.ac.uk/downloads...2179 days ago
Gap filling or Contigs extensions tools !
...c.edu/content/bcm-hgsc-software), and SCARPA (http://compbio.cs.toronto.edu/hapsembler/scarpa.html). See the PAGIT protocol: http://www.sanger.ac.uk/resources/software/pagit/...2165 days ago
List of non-commercial NGS genotype-calling software
...includes a mode for genotype calling IMPUTE2 http://mathgen.stats.ox.ac.uk/impute/impute_v2.html Multi-...otype calling. Requires fine-scale linkage map QCall ftp://ftp.sanger.ac.uk/pub/rd/QCALL Multi-sample LD...2096 days ago
Bioinformatics tools for genome assembly !
...igned for single-cell and multi-cell bacterial genomes, as well as small eukaryotic genomes. ABySS: A...data. Flye: A long-read assembler suitable for bacterial and small eukaryotic genomes. SMARTden...286 days ago
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