Results for "Variation and Disease"
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mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAS...is manual, describes how to choose the parameters and tun...2951 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequ...ilds on the concept of coverage plots and aims to assist (amongst other...embly or identification of structural variation in a genome re-sequenci...Hagfish requires a reference sequence and a&n...2926 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines...including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in th...mapping of reads containing that contain sequence variati...
2926 days ago
- This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variati...
2913 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural variations using sequencing data. The m...are designed to detect shared variation using data from multipl...ogeneous data sets, including variations in sequencing depth, read lengths and mix...
2818 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs in colour a...ltiple sequence alignments and co-variation information.R4RNA ...available for download and loc...
2823 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can...of genomes, with a focus on handling genome assembly data. The...a central reference sequence and other sequences as concentric...ft genomes; customized graphs and annotations can be displayed....sence, truncation or sequence variati...2794 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus...r neutral markers (e.g. SNPs) and loci under selection (QTLs, d...cified explicitly, or set at random. The map can hold an unlimi...spread throughout the genome and affect individual fitness....2793 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI'...n, sequence, structure, gene, variation, expression, etc.) from...ns take search terms from command-line arguments. Individual op...tep queries. Record retrieval and formatting normally complete...eamlessly between EDirect commands an...2775 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads....encing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. AR...including read alignment, de novo assembly, SNP and structure variati...
2760 days ago
