ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This pac...tact: gurtowsk@cshl.edu In short, the correction algorithm takes as input the unitigs fr...ng read data. More background information for the algorithm can be found:http://schatzlab...2321 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by...tream analysis. Long read correction algorithms reduce the error rate of lon...Of course, some long read correction algorithms are better than others, and...2321 days ago
Reference-free prediction of rearrangement breakpoint reads
lideSort-BPR ( b reak p oint r eads) is based on a fast algorithm for all-against-all compariso...2259 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using...2219 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to s...imate mapping locations for a read and then a banded Smith-Waterman alignment algorithm to compute the final alignmen...2211 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to fin...2202 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its hig...owly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be proved preserving...2198 days ago
Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assem...Genome assembly projects typically run multiple algorithms in an attempt to find the si...ngths and weaknesses. We present our metassembler algorithm that merges multiple assembli...2198 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies,...and thus speed-up genome finishing. The proposed algorithm builds an extension graph whe...maximizes the cumulative contig length. The Mix algorithm, approach and results were pu...2198 days ago
2175 days ago