Juicebox: Visualization and analysis software for Hi-C data
...Assembly Tools. Download Juicebox here, or use Juicebox on the web. Detailed documentation is av...ively (re)assemble genomes. Check out the Juicebox Assembly Tools Module website https://aidenlab.org...1533 days ago
1525 days ago
GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns
GSP4PDB is a user-friendly and efficient application to search and discover new patterns of protein-ligand interaction. GSP4PDB is part of the services provided...1510 days ago
CSAR-web: a web server of contig scaffolding using algebraic rearrangements
CSAR-web is a web-based tool that allows the users to efficiently and accurately scaffold (i.e...complete or incomplete reference genome from a related organism. CSAR-web can serve as a convenient and...1484 days ago
1482 days ago
PPAI: a web server for predicting protein-aptamer interactions
PPAI can query aptamers and proteins, predict aptamers and predict protein-aptamer interactions in batch mode precisely and efficiently, which would be a novel bioinformatics tool for the research of protein-aptamer interactions. PPAI web-server is freely available at http://39.96.85.9/PPAI1421 days ago
GROMACS: a versatile package to perform molecular dynamics
...ndreds to millions of particles. GROMACS is able to work with many biochemical molecules like proteins, lipids and nucleic acids. The WeNMR GROMACS web portal combines the versatili...1365 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...eving individual genomes The results are stored in a database, where they can be easily exported and shared, and can be inspected anywhere using a web interface. Internal checks f...1355 days ago
1349 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
...open application for post-docking structural filtration, available as a web-server. The new tool is easy..., hydrophobic contacts, π-stacking, and cation-π interactions. The web-server can process large libr...1255 days ago