2652 days ago
2593 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
....gfa | fold > reads.fa And then count how many contigs: grep ">" reads.fa | wc -l # Download sample PacBio from the PBcR website wget -O- http://www.cbcb.umd...2354 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...o reads for a given reference genome. NanoSim is written in Python and R. The source files and manual are available at the Genome Sciences Centre website: http://www.bcgsc.ca/platform...2333 days ago
An Introduction to Applied Bioinformatics
...y. You can find information on the courses I teach on my teaching website and information on my research and lab on my lab website.2259 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...rfomed, the individuals need to be genotyped; SEX-DETector takes files produced by Reads2snp (which is available for download on the PopPhyl website) as input....2170 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...as additional summary statistics derived from subset or element attributes. For further details about the original technique see the UpSet website. You can also check out the&n...1927 days ago
1598 days ago
Google Colab : Google Colab is a free cloud service and now it supports free GPU!
...applications using popular libraries such as Keras, TensorFlow, PyTorch, and OpenCV. If you have just a single notebook to submit, use the website https://google-colab.com...1560 days ago
Juicebox: Visualization and analysis software for Hi-C data
...e Juicebox jar files. Juicebox can now be used to visualize and interactively (re)assemble genomes. Check out the Juicebox Assembly Tools Module website https://aidenlab.org/ass...1539 days ago