Comment on "Commercial and public next-gen-seq (NGS) software"
VarScanvariant detection in massively parallel sequencing data http://varscan.sourceforge.net/3561 days ago
Comment on "Next generation sequencing(NGS) books"
Few next generation sequencing resources at http://www.nature.com/subjects/next-generation-sequencing This illumina http://res.illumina.com/documents/products/illumina_sequencing_introduction.pdf intro is good for beginners.3566 days ago
Comment on "List of popular bioinformatics software/tools"
Tools for next-generation sequencing analysis: http://ngsutils.org3583 days ago
Comment on "List of popular bioinformatics software/tools"
skewer (transferred from https://sourceforge.net/projects/skewer) implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences. https://github.com/relipmoc/skewer3585 days ago
3601 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
Next Generation Sequencing for DUMMIES http://users.ugent.be/~avierstr/nextgen/Next_generation_sequencing_web.pdf3616 days ago
Comment on "Does anyone have Nanopore latest updates?"
More data and relevant paper: http://figshare.com/articles/The_second_Oxford_Nanopore_read_ever_published/1060188 http://omicfrontiers.com/category/nanopore http://arxiv.org/abs/1406.42143621 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutor...3636 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
A new trainable, high-speed and biologically relevant alignment algorithms of high-throughput sequencing reads to coding DNA http://nar.oxfordjournals.org/content/early/2014/05/26/nar.gku473.full3642 days ago
Comment on "Does anyone have Nanopore latest updates?"
Another Nanopore sequencing based startup come into market: Quantapore Inc., Address: 1455 Adams Drive, Suite 1081, Menlo Park, CA 94025, Email: info@quantapore.co...3645 days ago