Results for "Whole genome"
Bookmarks
HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assem...1092 days ago
Simons Genome Diversity Project
Complete genome sequences from more than one hundred diverse human populations All genomes in the dataset were sequence...minated bias of alleles toward matching the human genome reference sequence, and deter...1092 days ago
Alignment of closely related whole genomes/scaffolds
...dramatic increase in the number of sequenced genomes for species across the tree...ires tools that can quickly compare multiple whole-genome sequences, millions of base p...ks have been created to report new tools for whole genome alignments. Please report ne...3018 days ago
- MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies r...
3009 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
3009 days ago
- RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to tran...
3009 days ago
- Pilon is a software tool which can be used to: Automat...tion Pilon requires as input a FASTA file of the genome along with one or more BAM fi...lysis to identify inconsistencies between the input genome and the evidence in the reads...
3008 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
3008 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3008 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between...TF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...rogram for aligning sequences to reference genome. We do not recommend using C...
3008 days ago
