Results for "Whole genome"
Top-level pages
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exac...2321 days ago
List of visualization tools for genome alignments
Genome browsers are useful not onl...need publication ready figure of genomes. Following are the list of genome alignment visualization tools...ation information of a reference genome http://bioinformatics.zj.cn/...and visualizing sequenced human genomes http://www.svaproject.org...2291 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and...ta/LTR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...ourceforge.net/ REPuter http://www.genomes.de/ RetroMap http://www.bu...2281 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that...rview of the workflow which includes Transcriptome/ Genome alignment, Differential expre...tering, Venn diagrams, CVA, UMI support and elastic genome browser used in RNA-Seq workf...2271 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual mov...DNA must enter the host nucleus, integrate into the genome, and in more complex organism...potential for genetic incompatibility with the host genome and mismatch between the nich...857 days ago
Some useful Bioinformatics links
Reference-free prediction of rearr...assembly of the European eel genome from nanopore sequencing read...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...oter_tutorial//Tutorial/CustomGenomes/CustomGenomes.html https://...2248 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key chall...ingle‐nucleotide variants as well as insertion/deletions variants in the human genome”2210 days ago
- $ sudo apt-get install python-numpy python-scipy python-m...###[Mon May 7 11:29:18 2018] Reduction...#file name genome size contigs heterozygous siz...n May 7 11:29:35 2018] Final reduction...#file name genome size contigs heterozygous siz...
2197 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling...aired reads" or "Toward almost closed genomes with GapFiller". There are a...take a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...n't interested in assembling the full genome, just the 100 kb part you're...2172 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps...r example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula... 2. sseqid subject (e.g., reference genome) sequence id 3. piden...2145 days ago
