Results for "Whole genome re-sequencing"
Top-level pages
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and ali...b/data/LTR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...er.sourceforge.net/ REPuter http://www.genomes.de/...2275 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze...iew of the workflow which includes Transcriptome/ Genome alignment, Differential expre...ring, Venn diagrams, CVA, UMI support and elastic genome browse...2265 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material bet...A must enter the host nucleus, integrate into the genome, and in more complex organism...tential for genetic incompatibility with the host genome and mi...851 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bio...assembly of the European eel genome from nanopore sequencing read...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...2242 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing st...gle‐nucleotide variants as well as insertion/deletions variants in the human genome”2204 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-not...#[Mon May 7 11:29:18 2018] Reduction...#file name genome size contigs heterozygous siz...May 7 11:29:35 2018] Final reduction...#file name genome size c...
2191 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, f...ired reads" or "Toward almost closed genomes with GapFiller". There are a...ake a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...'t interested in assembling the full genome, just...2166 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequence reconstruction/resurrection – is a technique used in the study o...2180 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula... 2. sseqid subject (e.g., reference genome) seque...2139 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced exten...p://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit Multi-sample....ac.uk/resources/software/margarita) MaCH http://genome.sph.um...2097 days ago
