Results for "Whole genome resequencing"
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Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitu...ce detection. PILER >De novo genome repeat finder. PILER-CR...ction of CRISPR repeats in bacterial genomes. QSCORE >Compare two...ents for benchmarking. PALS >Whole-genome...2876 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assem...
2868 days ago
- Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffold maps, allowing eit...
2868 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for...on using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The met...ults, but the method gains power across genomes and...
2813 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between ...FF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...;a program for aligning sequences to reference genome. We&...
2814 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other sc...d by mate-pairs. Such sources of information include alignment to a reference genome (Bamb...
2834 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphica...for the creation of high-quality, detailed circular maps of organellar genomes like the plastid genome (plas...
2834 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to i...the post-treatment depends on the availability of a reference genome/trans...
2834 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo asse...alization and quality assessment of de novo genome assemblies Citation This so...alization and quality assessment of de novo genome assem...
2826 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira...l. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biolo...
2825 days ago
