TRITEX sequence assembly pipeline for Triticeae genomes
...dozens of Mb and pseudomolecules with better gene space representation than a BAC-by-BAC assembly. It has never been tested and is not expected to work on heterozygous or autopolypl...1716 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
...erate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore the use of hardwa...1640 days ago
WOS-C Women Scientist Scheme KIRAN-IPR
...Women Scientist Scheme aims to train women from a myriad of scientific backgrounds for a year, this, in turn, allows them to even work from home and maintain a good work and home life balance. This c...1587 days ago
heatmaply: popular graphical method for visualizing high-dimensional data
This work is based on ggplot2 and plotly.js engine. It produces similar heatmaps as d3heatmap, with the advantage of speed (plotly.js is able to handle larger size matri...1572 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10...1567 days ago
The Global Alliance for Genomics and Health (GA4GH)
...nd technical standards-setting organization, seeking to enable responsible genomic data sharing within a human rights framework. GA4GH core funders and sponsors enable our work and allow us to convene the i...1544 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
...listing these relationships are extremely valuable to researchers performing comparative analyses of genomic sequence. Here we present our initial work in the form a program called&...1443 days ago
1414 days ago
GROMACS: a versatile package to perform molecular dynamics
...o perform molecular dynamics, i.e simulate the Newtonian equations of motion for systems with hundreds to millions of particles. GROMACS is able to work with many biochemical molecul...1364 days ago
COVID Moonshot: An international effort to DISCOVER A COVID ANTIVIRAL
The COVID Moonshot is an ambitious crowdsourced initiative to accelerate the development of a COVID antiviral. We work in the open with no intellectual property constraints. This way...1229 days ago