VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening
...VFLP: VirtualFlow for Ligand Preparation VFVS : VirtualFlow for Virtual Screenings They use the same core technology regarding the workflow management and parallelizatio...1423 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...such as 10x, inDrops, and Dropseq. Customize workflows for new technologies and pro...seq data The kallisto | bustools workflow is described in: Páll...ation and tutorials for the kallisto bustools workflow are available at http://...1127 days ago
GeneProf: analysis of high-throughput sequencing experiment
...ysis wizards make your life easy:Step-by-step workflows make it easy to analyse high...ich can be combined freely into sophisticated workflows (cp. Concept 'Workflows...xisting software can be easily wrapped in the workflow framework (cp. Section '...2497 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...orthologous gene assignment between given reference genomes. In addition, the modular framework of DFAST allows users to customize the annotation workflow easily and will also facilita...2365 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...ic data and compared its performance with similar existing software and data source. Conclusion CHSMiner is characterized by its integrated workflow, fast speed and convenient us...2361 days ago
Musket: a multistage k-mer spectrum based corrector
...argetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation r...2344 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...other programs, including genome alignment result and orthologs clusters, are also supported to be further analyzed or visualized in PGAP-X. The workflow and feature snapshot in PGAP-...2295 days ago
2171 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies. Its underlying procedure follows a similar workflow as described by Goris et...2124 days ago
Snakemake—a scalable bioinformatics workflow engine
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow.2073 days ago