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List of bioinformatics open source projects/software.
...-evolves-into-new-toolkit-net-bio.aspx A language-neutral bioinform...ow platform Tool for designing and executing phylogenetic workflows...etween systems biology software Galaxy http://galaxyproject.org/...desktop tool for interactive visual exploration of diverse genomic d...3771 days ago
List of In-silico Binding Site Prediction Tools
...cross different species. For example, it can highlight a cons...eb service for interactively exploring not only hot spot and...ns. In the previous two CASP experiments, the most successful...3d.cs.tau.ac.il/MultiBind/index.html Web servers for multiple...3758 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...birc.au.dk/mailund/coasim/index.htmlcosi The cosi package is...rchinstitute.com/software/index.htmlfastsimcoal A continuous-...arkers https://mathgen.stats.ox.ac.uk/genetics_software/hapge...a single bi-allelic site has experienced natural selection ht...3751 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, p...of bioinformatics relies heavily on Linux-based computers and software....asic admin tasks. The focus of this linux series is to help you underst...ad this article "An introduction to Linux for bioinformatics" by Paul S...3720 days ago
Perl one-liner for bioinformatician !!!
...converting and substituting text, deleting and printing certa...s /^$/' #double space a file except blank linesperl -pe '$_.=...a fileperl -lne '$a++ if /regex/; END {print $a+0}' #print th...#Convert DOS newlines into unix new lineperl -pe 's|\n|\r|' #...3642 days ago
Next generation sequencing in R or bioconductor environment
...r, the GRanges/GRangesList classes are more flexible and extensible to store additional i...gies, this package is primairly focused on Solexa/Illumina reads. Documentatio...binding events via a Bayesian hierarchical t-mixture model. The following samp...3639 days ago
Commercial and public next-gen-seq (NGS) software
...e assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extend...Wheeler-Transformed (BWT) index. Link to discussion thread he...uffix tree library, seed-and-extend alignment, SNP detection,...cing technology (GS20 or GS FLX). Compatible with 454, Solexa...3533 days ago
- ...so known to play vital role in controlling gene expression specifically at trans...Sequencing data analysis : http://tools.genxpro.net/omiras/ miRNApath( R...re: http://www.bioconductor.org/help/search/index.html?q=miRNA+target
3510 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastq...
3563 days ago
Apps for Busy Bioinformatics Researchers !!!
...ps://www.youtube.com/watch?v=mXeo9hXdZgM More @ https:...oud storage access like Dropbox to your sequencing files. Th...efa.mentha&hl=en GeneIndex: iPhone/iPad GeneIndex quick...lgorithms and augmented with experimentally derived function/...3556 days ago
