Results for "accuracy"
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable...1150 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...ng(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto...1150 days ago
- "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/
3666 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...r-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presents a signific...3228 days ago
- ...ations of all centromeres in a single yeast genome by exploiting the centromeres’ tendency to cluster in 3D space. We first demonstrate the accuracy of Centurion in identifying k...
3009 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an...2954 days ago
- ...mework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference...tatistically rigorous measure of single genome and metagenome assembly accuracy, which can be used to identif...
2935 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...c distances. We successfully simultaneously clustered 169 genomic and transcriptomic datasets from 4 kingdoms, achieving 100% accuracy at supra-species level and 78% accuracy for species level. Availabil...2883 days ago
- ...ymorphisms, and writes the true read coordinates as well as the number of polymorphisms and sequencing errors in read names. One can evaluate the accuracy of a mapper or a SNP caller w...
2877 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...dance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment of k-mers, Kraken achieves classification accuracy comparable to the fastest BLA...2872 days ago
