Results for "alignment"
Top-level pages
...arge range of techniques are used, including primary sequence alignment, protein 3D structure alignment, phylogenetic tree constructi...statistics or neural networks. When using a multiple sequence alignment, secondary structure can be p...3939 days ago
- ...tion to Bioinformatics Algorithms Lectures 1-2 by Dr. Max Alekseyev USC, 2009 Online Lectures on Bioinformatics Sequence Alignment Algorithms Algorithm for sequence alignment: dynamic programming Network...
3938 days ago
Bioinformatics Courses Around the World
...nn Institute of Science, Israel) Rutgers University, PhD Program in Computational Biology (Newark, New Jersey) Sequence Alignment and Modeling System &nbs...3935 days ago
Best book Titles for Learning Bionformatics
...n, Michael Y. Galperin, 2002, Kluwer Academic Publishers Comparative Genomics - Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment and the Evolution of Gene Fam...3910 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...from sequence reads: methods for alignment and assembly. Flicek & Bi...ta formats, data management, and alignment software tools The Sequence...ed Fast and accurate short read alignment with Burrows-Wheeler transfor...MUMmer software for full-genome alignment & comparisons] Searching...3771 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
.../hadlylab/ssc/index.htmlBEERS BEERS was designed to benchmark RNA-Seq alignment algorithms and also algorithm...//linum.cofc.edu/software.html#metasimRNA Seq Simulator RSS takes SAM alignment files from RNA-Seq data and s...3729 days ago
List of In-silico Binding Site Prediction Tools
...(http://pocket.uchicago.edu/). The pairwise alignment of the unbound and split-pock...hing (Brakoulias and Jackson 2004). Multiple alignments, structural superpositions a...ar protein binding sites by local structural alignment. Motivation: Exploitation of...3736 days ago
Next generation sequencing in R or bioconductor environment
...containers - GRanges, GRangesList and GappedAlignments - which are supporting other...and inspecting samtools BAM formatted binary alignment data. SAM/BAM is quickly beco...ides support for importing into R short read alignment data in BAM format (via Rsamt...3617 days ago
Commercial and public next-gen-seq (NGS) software
...to find semiglobal non-gapped alignments based on k-mer seeds. http:/...SAIK - MOSAIK produces gapped alignments using the Smith-Waterman alg.../www.gene.com/share/gmap/) to alignment Solexa reads. GMAP is free, t...ool for spliced and unspliced alignments and SNP detection of short s...3511 days ago
Software packages for next gen sequence analysis
...Mac OS X. * BWA - Heng Lee's BWT Alignment program - a progression from...genome. By default, BWA finds an alignment within edit distance 2 to the...ystem for the rapid whole genome alignment of finished or draft sequence...Genome Annotation/Genome Browser/Alignment Viewer/Assembly Database * Ea...3234 days ago
