Results for "alignments"
Top-level pages
...ar sequences contain information on sequence evolution in the form of specific conservation patters at all sequence positions. Multiple sequence alignments are useful for building se...3945 days ago
List of bioinformatics open source projects/software.
...e given assigned Residual Dipolar Coupling data SAM Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments Staden Package Sequence ass...3755 days ago
List of In-silico Binding Site Prediction Tools
...detected by geometric hashing (Brakoulias and Jackson 2004). Multiple alignments, structural superpositions an...protein domain-domain interaction information from 3DID and sequence alignments from PFAM together with struc...3742 days ago
Next generation sequencing in R or bioconductor environment
...defines three major data containers - GRanges, GRangesList and GappedAlignments - which are supporting other...genomic intervals as well as more specialized containers for storing alignments against a reference genome. T...3623 days ago
Commercial and public next-gen-seq (NGS) software
...m to find semiglobal non-gapped alignments based on k-mer seeds. http://...leotide Databases. Whole genome alignments to a reference genome. Writte...y finely the sensitivity of the alignments. Spaced seed intial filter, t...tool for analyzing cross_match alignments. Developed by Rene Warren and...3517 days ago
Software packages for next gen sequence analysis
...leotide Databases. Whole genome alignments to a reference genome. Writte...tool designed for accurate read alignments. It quickly aligns millions o...y finely the sensitivity of the alignments. Spaced seed intial filter, t...tool for analyzing cross_match alignments. Developed by Rene Warren and...3241 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...s Input: BAM (aligned in SAMtools API) Output: VCF Indelocator Description: (Broad Institute): does not perform realignment, relies on alignments in BAM files (BAM files need...2907 days ago
- ...nd of the genome. A useful online utility decodes a single SAM flag value into plain English. SAM Format: Text file format for storing sequence alignments against a reference genome. S...
2867 days ago
Genome Assembly Tools and Software - PART1 !!
...formance graphical viewer for next generation sequence assemblies and alignments.Supporting a range of input a...n RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of tr...2684 days ago
List of visualization tools for genome alignments
...ence genome http://bioinformatics.zj.cn/magicviewer/ MapView Alignments of huge-scale single-end and...ads http://omictools.com/mapview-s1367.html MultiPipMaker Computes alignments of similar regions in two DNA...2282 days ago
