Results for "ambiguity"
Blogs
BBTools for bioinformatician !
...BMap by adding the flags "minid=0.76 maxindel=16k minhits=1". With those parameters it is extremely sensitive.NOTE: 2 BBSplit has different ambiguity settings for dealing with rea...2409 days ago
Bookmarks
flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
FlexiDot is a cross-platform dotplot suite generating high quality self, pairwise and all-against-all visualizations. To improve dotplot suitability for comparison of co...1610 days ago
Top-level pages
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...es not matter whether they map ambiguously within human, only whether they are ambiguous between human and mouse. BBSplit tracks this additional ambiguity information and decides how t...2453 days ago
News
- ...rbind() will delegate recursively to methods::cbind2 (methods::rbind2) when at least one argument is an S4 object and S3 dispatch fails (due to ambiguity). (Windows.) download.file(q...
3444 days ago
Bio-Scripts
Create genome scaffolding with Perl
...", AG => "R", AR => "A", GR => "G", CT => "Y", CY => "C", TY => "T", AT => "W", AW => "A", TW => "T", ); # if "simple" ambiguity can be found, return that, ot...2447 days ago
Tags
flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
FlexiDot is a cross-platform dotplot suite generating high quality self, pairwise and all-against-all visualizations. To improve dotplot suitability for comparison of consensus and error-prone sequences, FlexiDot harbors routines for strict and relaxed handling of mismatches and ambiguous residue...Tags: Highly, customizable, ambiguity, aware, dotplots, visual, sequence, analyses, synteny
1610 days ago
Comments
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...lap - Equivalent to: '-a anchor -w normal --overlapper --evalue 1e0 --ambiguity 0.50 --secondary' sensitive -..., --circular - Reference sequence is a circular genome. [false] -F, --ambiguity FLT All mapping positions wit...2430 days ago
